API

Import anndata_rs as:

import anndata_rs as ad

Core AnnData classes

AnnData(*, filename[, X, obs, var, obsm, ...])

An annotated data matrix.

AnnDataSet(adatas, *, filename[, add_key, ...])

Similar to AnnData, AnnDataSet contains annotations of observations obs (obsm, obsp), variables var (varm, varp), and unstructured annotations uns.

IO

read(filename[, backed, backend])

Read .h5ad-formatted hdf5 file.

read_mtx(mtx_file, *[, obs_names, ...])

Read Matrix Market file.

read_dataset(filename, *[, ...])

Read AnnDataSet object.