snapatac2.datasets.pbmc10k_multiome

snapatac2.datasets.pbmc10k_multiome(modality='RNA', type='h5ad')

Single-cell multiome dataset of 10k PBMCs from 10x Genomics.

Parameters:

• modality (Literal['ATAC', 'RNA']) –

  One of the following:

  • ”ATAC”: ATAC-seq data.

  • ”RNA”: RNA-seq data.

• type (Literal['fragment', 'h5ad']) –

  One of the following:

  • ”fragment”: the fragment file.

  • ”h5ad”: preprocessed h5ad file.

Returns:

path to the file.

Return type:

Path