Input data format¶
ATAC-seq¶
Supported formats | Description | Required tags | Optional tags | Note |
---|---|---|---|---|
*.fastq or
*.fastq.gz |
Raw reads | None | None | |
*.bam |
Aligned reads | None | “filtered”: do not further filter this file | |
*.bed or
*.bed.gz |
Aligned reads | None | Paired reads need to be provided as the 3-column BEDPE format used by MACS2 |
RNA-seq¶
Supported formats | Description | Required tags | Optional tags |
---|---|---|---|
*.fastq or
*.fastq.gz |
Raw reads | None | None |
Plain Text | Expression profile | “gene quantification” | None |
HiC¶
Supported formats | Description | Required tags | Optional tags |
---|---|---|---|
Plain Text | a list of Loops | “loops” | None |
Taiji can automatically download data from ENCODE portal and GEO database.