snapatac2.pl.tsse#

snapatac2.pl.tsse(adata, show_cells=False, min_fragment=500, width=600, height=400, show=True, interactive=True, out_file=None)[source]#

Plot the TSS enrichment vs. number of fragments density figure.

Parameters

  • adata (AnnData) – Annotated data matrix.

  • show_cells (bool) – Whether to show individual cells as dots on the plot

  • min_fragment (int) – The cells’ unique fragments lower than it should be removed

  • width (int) – The width of the plot

  • height (int) – The height of the plot

  • show (bool) – Show the figure

  • interactive (bool) – Whether to make interactive plot

  • out_file (str | None) – Path of the output file for saving the output image, end with ‘.svg’ or ‘.pdf’ or ‘.png’ or ‘.html’.

Returns

If show=False and out_file=None, an plotly.graph_objects.Figure will be returned, which can then be further customized using the plotly API.

Return type

‘plotly.graph_objects.Figure’ | None

Examples

(Source code)