snapatac2.datasets.pbmc500#

snapatac2.datasets.pbmc500(type='fragment', downsample=False)[source]#

scATAC-seq dataset of 500 PBMCs from 10x Genomics.

This function returns the path to the fragment file of the 10X scATAC-seq dataset containing ~500 PBMCs.

Parameters:

  • type (Literal['fragment, bam']) –

    One of the following:

    • ”fragment”: the fragment file.

    • ”bam”: bam file.

  • downsampled – Whether to return downsampled dataset.

Returns:

Path to the fragment file.

Return type:

Path