snapatac2.datasets.pbmc5k#

snapatac2.datasets.pbmc5k(type='fragment')[source]#

scATAC-seq dataset of 5k PBMCs from 10x Genomics.

Parameters:

type (Literal['fragment, h5ad, annotated_h5ad']) –

One of the following:

  • ”fragment”: the fragment file.

  • ”h5ad”: preprocessed h5ad file.

  • ”annotated_h5ad”: annotated h5ad file.

Returns:

path to the file.

Return type:

Path