snapatac2.genome.GRCm39

snapatac2.genome.GRCm39 = <snapatac2.genome.Genome object>

A class that encapsulates information about a genome, including its FASTA sequence, its annotation, and chromosome sizes.

snapatac2.genome.fasta

The path to the FASTA file.

snapatac2.genome.annotation

The path to the annotation file.

snapatac2.genome.chrom_sizes

A dictionary containing chromosome names and sizes.

Raises:

ValueError – If fasta or annotation are not a Path, a string, or a callable.