snapatac2.pl.tsse#

snapatac2.pl.tsse(adata, min_fragment=500, width=500, height=400, **kwargs)[source]#

Plot the TSS enrichment vs. number of fragments density figure.

Parameters:

  • adata (AnnData) – Annotated data matrix.

  • min_fragment (int) – The cells’ unique fragments lower than it should be removed

  • width (int) – The width of the plot

  • height (int) – The height of the plot

  • kwargs – Additional arguments passed to render_plot to control the final plot output. Please see render_plot for details.

Returns:

If show=False and out_file=None, an plotly.graph_objects.Figure will be returned, which can then be further customized using the plotly API.

Return type:

‘plotly.graph_objects.Figure’ | None

See also

render_plot

Examples

(Source code, html)