snapatac2.pl.tsse#
- snapatac2.pl.tsse(adata, min_fragment=500, width=500, height=400, **kwargs)[source]#
Plot the TSS enrichment vs. number of fragments density figure.
- Parameters:
adata (AnnData) – Annotated data matrix.
min_fragment (int) – The cells’ unique fragments lower than it should be removed
width (int) – The width of the plot
height (int) – The height of the plot
kwargs – Additional arguments passed to
render_plot
to control the final plot output. Please seerender_plot
for details.
- Returns:
If
show=False
andout_file=None
, anplotly.graph_objects.Figure
will be returned, which can then be further customized using the plotly API.- Return type:
‘plotly.graph_objects.Figure’ | None
See also
Examples
(Source code, html)