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SnapATAC2

Installation
Tutorials
API reference
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Installation
Tutorials
API reference
Development
Release notes
Learn

GitHub

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AnnData(Set) object manipulation
Preprocessing: pp
Tools: tl
Metrics
Plotting: pl
Exporting: ex
- snapatac2.ex.export_fragments
- snapatac2.ex.export_coverage
Datasets
Recipes
- snapatac2.pp.recipe_10x_metrics

API reference
AnnData(Set) object manipulation
snapatac2.AnnDataSet
snapatac2.AnnDataSet.shape

snapatac2.AnnDataSet.shape#

AnnDataSet.shape#

Shape of data matrix (n_obs, n_vars).

Return type:: tuple[int, int]

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AnnDataSet.shape

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