snapatac2.datasets.cis_bp#
- snapatac2.datasets.cis_bp(unique=True)[source]#
A list of transcription factor motifs curated by the CIS-BP database.
This function returns motifs curated from the CIS-BP database [Weirauch14]. The motifs can be used to scan the genome for potential binding sites and to perform motif enrichment analysis.
- Parameters:
unique (
bool) – A transcription factor may have multiple motifs. Ifunique=True, only the motifs with the highest information content will be selected.- Returns:
A list of motifs.
- Return type:
list[PyDNAMotif]
See also
motif_enrichmentcompute motif enrichment.