snapatac2.datasets.pbmc500

snapatac2.datasets.pbmc500(type='fragment', downsample=False)

scATAC-seq dataset of 500 PBMCs from 10x Genomics.

This function returns the path to the fragment file of the 10X scATAC-seq dataset containing ~500 PBMCs.

Parameters:

• type (Literal['fastq', 'bam', 'fragment']) –

  One of the following:

  • ”fragment”: the fragment file.

  • ”bam”: bam file.

• downsampled – Whether to return downsampled dataset.

Returns:

Path to the fragment file.

Return type:

Path | list[Path]