snapatac2.tl.marker_regions

snapatac2.tl.marker_regions(data, groupby, pvalue=0.01)

A quick-and-dirty way to get marker regions.

Parameters:

• data (AnnData | AnnDataSet) – AnnData or AnnDataSet object.

• groupby (str | list[str]) – Grouping variable.

• pvalue (float) – P-value threshold.

Return type:

dict[str, list[str]]